ASRUtils
AncestralState
BoundingMinimizeFunction
ConditionalLikelihood
ConditionalMinimizeFunction
EvolveCharacters
GlobalReconstructor
LikelihoodMinimizeFunction
LocalReconstructor
MarginalMinimizeFunction
MinimizeFunction
MyDouble
MyStringTokenizer
NexusReader
Node
Optimizer
ParsimonyReconstructor
RandomExponentialDistribution
TreeStringReader
TreeStringWriter
UpperBound
YuleProcess
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